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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95937163_95938458_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95937163 - 95938458
Intron Length:
1296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGCA
5'SS Class:
major
3'SS Sequence:
CAAACTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AATTATTTGACT
Flanking Amino Acid:
AANSEEITYQVTEVSPNVTK
Intron Amino Acid Position:
1729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.4
36.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
62.4
0.28
1
58.3
42.4
Minor 5ss
30.9
-2.2
3.4
41.1
45.4
Minor BPS
65.9
0.58
1.5
79.31
36.3

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756