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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95938591_95940481_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95938591 - 95940481
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CCCTCTTTGACA
Flanking Amino Acid:
DAVTLNITSQGQQFPAILTD
Intron Amino Acid Position:
1685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.2
0.55
0.9
70.7
33.5
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
65.8
0.49
1.3
65.36
41.9

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015345
95930237 - 95997992
67756
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756