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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95940673_95942901_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95940673 - 95942901
Intron Length:
2229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
ACATATATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
SPQEITLTISELSTTGGTNL
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.6
0.44
1
59.3
45
Minor 5ss
36.8
-1.5
3.1
49.3
41.1
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015345
95930237 - 95997992
67756