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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95943826_95944928_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95943826 - 95944928
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TATTTGTTAACT
Flanking Amino Acid:
ATSINNITLQIDPSILQQSN
Intron Amino Acid Position:
1484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
81
0.7
0.9
77.2
36.4
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
69.9
0.7
2
88.69
36.1

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756