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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95946655_95948549_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95946655 - 95948549
Intron Length:
1895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
AAAATTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
TLDCHVKTHTGQKLFSCHVC
Intron Amino Acid Position:
1313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.9
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.3
0.41
1
59.2
46
Minor 5ss
30.5
-2.2
2.5
33.4
41.8
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756