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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95949394_95949872_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95949394 - 95949872
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATTTTTTGATA
Flanking Amino Acid:
VAAATETGGGVTCVEDDEEN
Intron Amino Acid Position:
1185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78.5
0.64
0.9
76.8
37.1
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
69.2
0.6
1.1
73.93
31.2

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756