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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95950354_95950452_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95950354 - 95950452
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTTAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
DSEDQSRRSYRCEYCNKGFK
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
77.8
32.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
44.3
-0.6
2.5
58.6
46
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756