About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95958329_95960119_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95958329 - 95960119
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TTTCTCTTAAAA
Flanking Amino Acid:
KKSCHLKQHIRSHTGEKPFK
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
69.9
0.49
1
61.3
37
Major PPT
64.7
0.33
1.1
68.2
35.6
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
74.6
0.77
1.3
82.08
32

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756