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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95963213_95965182_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95963213 - 95965182
Intron Length:
1970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
SLKVHIRLHTGVRPFACPHC
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
0.9
70
40.2
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015345
95930237 - 95997992
67756
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756