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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95968457_95971446_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95968457 - 95971446
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCCTTTACA
Flanking Amino Acid:
LQPVDNKWKNATHFRSPLLQ
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.4
0.62
0.9
74
40
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
77.4
0.86
1.5
83.52
37

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756
ENSAPLT00000039309
95930237 - 95997992
67756