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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95971519_95973398_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95971519 - 95973398
Intron Length:
1880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTGCTTTTATT
Flanking Amino Acid:
SSADVSHVTADSVTQPLTTS
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.7
0.8
0.7
81.6
29.9
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
53.9
0.2
1.7
69.21
42.4

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015345
95930237 - 95997992
67756
ENSAPLT00000039309
95930237 - 95997992
67756
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756