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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95973546_95975602_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95973546 - 95975602
Intron Length:
2057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGTACTTAAACA
Flanking Amino Acid:
QSHIQRVHSEVKNGPTYNCT
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
75.2
0.57
1
76.3
32.7
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
62.1
0.38
1.7
72.73
39.2

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756
ENSAPLT00000039309
95930237 - 95997992
67756