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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95987295_95997736_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95987295 - 95997736
Intron Length:
10442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGGC
5'SS Class:
major
3'SS Sequence:
GCTTGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AATATCTTGATG
Flanking Amino Acid:
GESGKAGSEADGVLTPTIEN
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.9
41.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.2
0.64
0.9
72.9
37.4
Minor 5ss
36
-1.6
3.4
50.2
46.4
Minor BPS
57
0.07
1.4
57.73
37.9

Associated Gene:

Gene:
ZNF236
Ensembl Gene ID:
ENSAPLG00000014682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037802
95930237 - 95997992
67756
ENSAPLT00000025939
95930237 - 95997992
67756
ENSAPLT00000015345
95930237 - 95997992
67756
ENSAPLT00000039309
95930237 - 95997992
67756