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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9601489_9700068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9601489 - 9700068
Intron Length:
98580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
LCKSYEICVNDGIFGRCQQV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743