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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96125623_96168018_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
96125623 - 96168018
Intron Length:
42396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTATGTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.5
0.75
0.9
81
36
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
48
-0
2.2
72.19
39.3

Associated Gene:

Gene:
ZNF516
Ensembl Gene ID:
ENSAPLG00000015083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015711
96125496 - 96227229
101734