About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96170050_96212021_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96170050 - 96212021
Intron Length:
41972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTTGTCCCATTC
Flanking Amino Acid:
SEEGAADPSIDEKPYHCNFS
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
72.8
0.57
1
81
30.3
Major PPT
77.1
0.61
0.9
74.7
35.3
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
42.9
-0.5
2
58.52
41

Associated Gene:

Gene:
ZNF516
Ensembl Gene ID:
ENSAPLG00000015083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041766
96168019 - 96227054
59036
ENSAPLT00000022201
96168144 - 96295851
127708
ENSAPLT00000021549
96168144 - 96227411
59268
ENSAPLT00000015711
96125496 - 96227229
101734