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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96213510_96218757_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96213510 - 96218757
Intron Length:
5248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTCACA
Flanking Amino Acid:
GANSPVLDHTDVFRLCLRAP
Intron Amino Acid Position:
1132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.9
0.72
0.8
76.2
31.2
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
61
0.34
2.1
76.36
40.9

Associated Gene:

Gene:
ZNF516
Ensembl Gene ID:
ENSAPLG00000015083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015711
96125496 - 96227229
101734