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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96213510_96294810_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96213510 - 96294810
Intron Length:
81301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTAACTTACCT
Flanking Amino Acid:
GANSPVLDHTGHMCSATLWE
Intron Amino Acid Position:
1132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.3
0.48
0.9
63.5
37.5
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
64.6
0.54
1.9
85.99
39.7

Associated Gene:

Gene:
ZNF516
Ensembl Gene ID:
ENSAPLG00000015083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022201
96168144 - 96295851
127708