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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96219434_96227169_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96219434 - 96227169
Intron Length:
7736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGAAT
U12 Branch Point Sequence:
TCCTTCTTACAG
Flanking Amino Acid:
HLRTHQRSHTGERPHQRRRR
Intron Amino Acid Position:
1167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
49.1
-0
1.5
58
45.4
Major PPT
84.8
0.78
0.7
79.2
26.5
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
50
-0.1
1.8
55.39
46.1

Associated Gene:

Gene:
ZNF516
Ensembl Gene ID:
ENSAPLG00000015083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021549
96168144 - 96227411
59268