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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96220409_96226700_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
96220409 - 96226700
Intron Length:
6292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
ACTTGATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATCTTTAATT
Flanking Amino Acid:
HTTSADAPKQNIPSIFSTW*
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.1
0.63
0.9
73.9
40.1
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
84.8
1.17
0.9
92.65
29.3

Associated Gene:

Gene:
ZNF516
Ensembl Gene ID:
ENSAPLG00000015083
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041766
96168019 - 96227054
59036