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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96381922_96385869_F

Intron Information:

Intron Rank:
140390
Intron Class:
major
Intron Phase:
Intron Coordinates:
96381922 - 96385869
Intron Length:
3948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTACCTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
74
0.6
1
65.6
41.1
Major PPT
78.8
0.65
0.8
74.2
35.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
69.5
0.69
1.4
83.66
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025534
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040366
96381808 - 96391928
10121