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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96457457_96464798_R

Intron Information:

Intron Rank:
135491
Intron Class:
major
Intron Phase:
Intron Coordinates:
96457457 - 96464798
Intron Length:
7342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GCCTGTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.1
0.54
1
73.4
36.5
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
48.1
-0
2
63.63
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020335
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043820
96456803 - 96465286
8484