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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96512267_96557368_R

Intron Information:

Intron Rank:
148416
Intron Class:
major
Intron Phase:
Intron Coordinates:
96512267 - 96557368
Intron Length:
45102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCTGC
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAGAT
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
56.8
43.5
Major BPS
57.8
0.19
1.1
54.7
40.8
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
42.9
-0.8
3.2
55.5
44.3
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036377
96511390 - 96574135
62746