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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96591435_96592581_R

Intron Information:

Intron Rank:
149275
Intron Class:
major
Intron Phase:
Intron Coordinates:
96591435 - 96592581
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TTTTCCTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
69.4
0.44
0.9
67.6
37
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
90.6
1.35
1
101.7
23.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027809
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021159
96591091 - 96614690
23600