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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96622691_96633239_F

Intron Information:

Intron Rank:
126215
Intron Class:
major
Intron Phase:
Intron Coordinates:
96622691 - 96633239
Intron Length:
10549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TTATGTTGGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
70
0.5
1
59.6
38.6
Major PPT
88.1
0.86
0.7
80.4
31.6
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
52.9
0.17
2
76.36
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022357
96620772 - 96633441
12670