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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96805373_96811349_R

Intron Information:

Intron Rank:
134405
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
96805373 - 96811349
Intron Length:
5977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCGCCCTGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
GATACTCGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
59.2
0.21
1
58.9
37
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
46
-0.3
1.7
55.11
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031992
96800177 - 96811798
11622
ENSAPLT00000023365
96800177 - 96811798
11622