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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96825437_96921943_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96825437 - 96921943
Intron Length:
96507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATGATAC
Flanking Amino Acid:
ENPDLAYLHAGIVSKSYECR
Intron Amino Acid Position:
1840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.1
35.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
37.2
-1.5
3.2
44.7
44.3
Minor BPS
43.6
-0.5
1.9
59.31
38.9

Associated Gene:

Gene:
ZNF407
Ensembl Gene ID:
ENSAPLG00000015102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015746
96824079 - 97143627
319549