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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96922123_96949183_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
96922123 - 96949183
Intron Length:
27061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTGCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATT
Flanking Amino Acid:
KPYRCPWCDYRSNCAENIRK
Intron Amino Acid Position:
1780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.3
40.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.3
0.68
0.8
77.9
36.1
Minor 5ss
34.1
-1.8
3.2
49.3
46.5
Minor BPS
79.8
1.01
1
88.33
30.2

Associated Gene:

Gene:
ZNF407
Ensembl Gene ID:
ENSAPLG00000015102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015746
96824079 - 97143627
319549