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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_96949305_96957412_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96949305 - 96957412
Intron Length:
8108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCACCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TAATGCATATCT
Flanking Amino Acid:
ALTKHRRQHTGEKPFKCDEC
Intron Amino Acid Position:
1740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
72.3
0.5
0.9
62.8
39.3
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
47.5
-0.1
2.2
71.3
44.9

Associated Gene:

Gene:
ZNF407
Ensembl Gene ID:
ENSAPLG00000015102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015746
96824079 - 97143627
319549