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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97024006_97122070_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97024006 - 97122070
Intron Length:
98065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTGTTTGACA
Flanking Amino Acid:
GMREYKCHVCGVAFVMKKHL
Intron Amino Acid Position:
1631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.2
0.59
1
72.2
42.7
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
63.4
0.41
1.8
74.82
36.8

Associated Gene:

Gene:
ZNF407
Ensembl Gene ID:
ENSAPLG00000015102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015746
96824079 - 97143627
319549