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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97122186_97128015_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97122186 - 97128015
Intron Length:
5830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATGCTAAATT
Flanking Amino Acid:
AFLAHIRTHTGSKPFKCKIC
Intron Amino Acid Position:
1593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
64.9
0.34
1
63.5
42.1
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
59
0.36
2.1
80.42
41.9

Associated Gene:

Gene:
ZNF407
Ensembl Gene ID:
ENSAPLG00000015102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015746
96824079 - 97143627
319549