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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97132828_97143479_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
97132828 - 97143479
Intron Length:
10652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
80
0.75
1
78.6
31
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
ZNF407
Ensembl Gene ID:
ENSAPLG00000015102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015746
96824079 - 97143627
319549