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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97165417_97165806_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97165417 - 97165806
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACATC
5'SS Class:
major
3'SS Sequence:
GCATGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTCACTTATGA
Flanking Amino Acid:
YKAARRAIKTVFGEDPDFIR
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.7
41.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
70.8
0.47
1
66.2
43.9
Minor 5ss
42.2
-0.9
3.2
60.3
44.4
Minor BPS
50.2
0
2.1
69.95
42

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038733
97164068 - 97176581
12514
ENSAPLT00000009296
97164068 - 97178723
14656
ENSAPLT00000004397
97164068 - 97179910
15843