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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97168654_97170028_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97168654 - 97170028
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GACTATTTACAT
Flanking Amino Acid:
TRGNACFFVEVEGGDKDLHS
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72.9
0.52
1
68.1
42.3
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
46.2
-0.2
1.8
59.99
43.1

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038733
97164068 - 97176581
12514
ENSAPLT00000009296
97164068 - 97178723
14656
ENSAPLT00000004397
97164068 - 97179910
15843