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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97170230_97172159_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97170230 - 97172159
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
GCTGTTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCCTTATCC
Flanking Amino Acid:
AVETFRALKLAIPVNFKFII
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
71.7
38.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.3
0.52
1
70
40.6
Minor 5ss
40.8
-1
3.1
55.4
37.1
Minor BPS
76.5
0.81
1.5
83.42
35.9

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038733
97164068 - 97176581
12514
ENSAPLT00000009296
97164068 - 97178723
14656
ENSAPLT00000004397
97164068 - 97179910
15843