About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97174636_97175226_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97174636 - 97175226
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CCTTATTGAACT
Flanking Amino Acid:
IDLHQSDFIKDLKEWVAVES
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
72.4
0.5
0.9
67.4
32.5
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
57.8
0.32
1.7
73.41
43.5

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038733
97164068 - 97176581
12514
ENSAPLT00000009296
97164068 - 97178723
14656
ENSAPLT00000004397
97164068 - 97179910
15843