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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97175346_97175930_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
97175346 - 97175930
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
78.1
35
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
88.9
1.3
0.8
96.91
27.6

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038733
97164068 - 97176581
12514