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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97175346_97178698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97175346 - 97178698
Intron Length:
3353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTTTAACT
Flanking Amino Acid:
MLCYFRGLYTVHLTLELP
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
78.1
35
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
88.9
1.3
0.8
96.91
27.6

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009296
97164068 - 97178723
14656