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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97175346_97179645_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97175346 - 97179645
Intron Length:
4300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCCAC
5'SS Class:
major
3'SS Sequence:
CTTTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTTTAACT
Flanking Amino Acid:
TEARLPASTKDTVHLTLELP
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
63.2
43.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
78.1
35
Minor 5ss
36.8
-1.5
3.3
49.6
47
Minor BPS
88.9
1.3
0.8
96.91
27.6

Associated Gene:

Gene:
CNDP1
Ensembl Gene ID:
ENSAPLG00000008937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004397
97164068 - 97179910
15843