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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97226436_97230709_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97226436 - 97230709
Intron Length:
4274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TCTTTTGCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
CTATGGTTATTC
Flanking Amino Acid:
ESGRSILARLCLDYSSGVLT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
84.5
0.78
0.8
77
37.3
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
42
-0.6
2.5
54.27
44.4

Associated Gene:

Gene:
DIPK1C
Ensembl Gene ID:
ENSAPLG00000009958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010359
97226247 - 97235567
9321