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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97231388_97234440_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97231388 - 97234440
Intron Length:
3053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTTATCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATCC
Flanking Amino Acid:
ENFAIRHDLTVVAIDVDMAF
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
46.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.7
81
29.9
Minor 5ss
43.7
-0.7
2.9
56.4
47.8
Minor BPS
64.6
0.44
1.6
73.19
38.5

Associated Gene:

Gene:
DIPK1C
Ensembl Gene ID:
ENSAPLG00000009958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010359
97226247 - 97235567
9321