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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97262091_97264263_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97262091 - 97264263
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGTT
U12 Branch Point Sequence:
GTTTTGTTAACA
Flanking Amino Acid:
VKKGGARRRQKEEGSSKPKK
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
77.9
0.63
1
73.3
40.9
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028433
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034255
97262003 - 97270989
8987