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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97264384_97265594_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97264384 - 97265594
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TCTTTATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATGTCTTTATTT
Flanking Amino Acid:
CLHSRPNCEQMFTGKENLRC
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79
0.65
1
83.5
30.8
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
65
0.55
1.5
77.76
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028433
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034255
97262003 - 97270989
8987