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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97268453_97268572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97268453 - 97268572
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAG
U12 Branch Point Sequence:
GTGTCCTTTAGT
Flanking Amino Acid:
EEFQMHWKNLYGYILPEDLE
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
57.3
0.18
1.7
57.1
49.4
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
59.6
0.38
2
76.83
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028433
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034255
97262003 - 97270989
8987