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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97268670_97269301_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
97268670 - 97269301
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
TACCTGTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TCTTCTTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
65.9
0.36
1
59.9
40.2
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
73.7
0.82
1.6
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028433
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034255
97262003 - 97270989
8987