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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97289211_97291109_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97289211 - 97291109
Intron Length:
1899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTCCTTATTT
Flanking Amino Acid:
ESFIIGELHPDDRAKLQKPT
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
78.2
37.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.9
78.3
34.9
Minor 5ss
34.4
-1.8
2.8
43.3
43.8
Minor BPS
67.7
0.63
1.6
79.24
43.6

Associated Gene:

Gene:
CYB5A
Ensembl Gene ID:
ENSAPLG00000025505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027525
97286621 - 97294911
8291