About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97291140_97292935_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97291140 - 97292935
Intron Length:
1796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
ATGTAAATATCT
Flanking Amino Acid:
DDRAKLQKPTEPLITTVQSN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
43.5
-0.4
2.2
65.96
43.9

Associated Gene:

Gene:
CYB5A
Ensembl Gene ID:
ENSAPLG00000025505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027525
97286621 - 97294911
8291