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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97292971_97293758_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97292971 - 97293758
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
AACTTCTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAACT
Flanking Amino Acid:
PLITTVQSNSSSWSNWVIPA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.8
0.56
0.9
66.4
39.8
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
68.6
0.66
1.6
81.74
40.3

Associated Gene:

Gene:
CYB5A
Ensembl Gene ID:
ENSAPLG00000025505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027525
97286621 - 97294911
8291