Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97305805_97306301_F

Intron Information:

Intron Rank:

136886

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

97305805 - 97306301

Intron Length:

497

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAA|GCTAACTCT

5'SS Class:

weak_major

3'SS Sequence:

TAGGAAGGCACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTCAA

U12 Branch Point Sequence:

AACTTGAGAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.5

0.08

1.4

54.9

43.9

Major BPS

66.8

0.42

1.1

69.4

37.7

Major PPT

49.1

-0

1.1

38.7

43.2

Minor 5ss

33.6

-1.9

49.6

40.8

Minor BPS

41.5

-0.6

2.2

52.4

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024315

97304688 - 97306448

1761