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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_97342525_97345804_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97342525 - 97345804
Intron Length:
3280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
TATGTTTTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
NKRFYHLANDNGIWLKIYSG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
78.9
0.65
1
78.3
39.6
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
FBXO15
Ensembl Gene ID:
ENSAPLG00000012462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012985
97338479 - 97364355
25877